SOSUI/submit a protein sequence

SOSUI: Submit a protein sequence

[Sample Sequences] [References]


Enter a title or comment for the sequence :

Enter your sequence with one-letter symbol (by copy & paste) :
(Minimum: 20 a.a., Maximum: 5000 a.a.)

To execute the query, press this button :
To clear the form, press this button :

mailto: sosuijp@gmail.com

[Sample Sequences]

Rhodopsin (bovine)
Cytochrome c oxidase I subunit (bovine)
Myoglobin (human)

[References]

Hirokawa T., Boon-Chieng S., and Mitaku S., Bioinformatics, 14 378-9 (1998)
SOSUI: classification and secondary structure prediction system for membrane proteins.
[Abstruct] [Full Text(PDF)]

Mitaku S., Hirokawa T. Protein Eng. 11 (1999) Physicochemical factors for discriminating between soluble and membrane proteins: hydrophobicity of helical segments and protein length
[Abstruct] [Full Text(PDF)]

Mitaku S., Hirokawa T., and Tsuji T., Bioinformatics, 18 608-16 (2002)
Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane-water interfaces.
[Abstruct] [Full Text(PDF)]

[Related papers]

Mitaku S., Hoshi S., and Kataoka R., J. Phys. Soc. Jpn 54 2047-2054 (1985)
Spectral Analysis of Amino Acid Sequence. II. Characterization of &A-Helices by Local Periodicity
[Abstruct] [Full Text(PDF)]

Yanagihara N., Suwa M., Mitaku S. Biophys Chem. 34 69-77 (1989)
A theoretical method for distinguishing between soluble and membrane proteins
[Abstruct] [Full Text(PDF)]

Mitaku S., Ono M., Hirokawa T., Boon-Chieng S., Sonoyama M., Biophys Chem 82 165-71 (1999)
Proportion of membrane proteins in proteomes of 15 single-cell organisms analyzed by the SOSUI prediction system
[Abstract] [Full Text(PDF)]

Mitaku S., Hirokawa T., Ono M., Genome Informatics, 9 367-368 (1998)
Classification of Membrane Proteins by Types of Transmembrane Helices Using SOSUI System
[Full Text(PDF)]

Hayashibe T., Hirokawa T., Mitaku S., Genome Informatics, 11 416-417 (2000)
Novel Index of Polar Amino Acids Characterizing End Region of Transmembrane Helices
[Abstruct] [Full Text(PDF)]