N-BIO BINDS

Predict 3D structure of multi-domain protein

Input type:
Amino acid sequence
in FASTA format:
FASTA format file:
domain 1 PDB format file: chain:
domain 2 PDB format file: chain:
domain 3 PDB format file: chain:
domain 4 PDB format file: chain:
domain 5 PDB format file: chain:
domain 6 PDB format file: chain:
domain 7 PDB format file: chain:
domain 8 PDB format file: chain:
domain 9 PDB format file: chain:
domain 10 PDB format file: chain:
Whole amino acid sequence
Amino acid sequence
in FASTA format:
FASTA format file:
Parameters for DINE
KIP method Threshold of sequence identity: % Threshold of sequence coverage: % Threshold of BLAST E-value:
IP method Threshold of IP score: Threshold of residue contact: Minimum size of interface: aa.
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Sample PDB file (glucosamine 6-phosphate synthase)

  • glutaminase (N-terminal) domain: 1xff.pdb (chain A)
  • isomerase (C-terminal) domain: 1moq.pdb (chain A)

Sample FASTA sequence

>gi|253797503|ref|YP_003030504.1| hypothetical protein TBMG_00576 [Mycobacterium tuberculosis KZN 1435]
MKLFDDRGDAGRQLAQRLAQLSGKAVVVLGLPRGGVPVAFEVAKSLQAPLDVLVVRKLGVPFQPELAFGA
IGEDGVRVLNDDVVRGTHLDAAAMDAVERKQLIELQRRAERFRRGRDRIPLTGRIAVIVDDGIATGATAK
AACQVARAHGADKVVLAVPIGPDDIVARFAGYADEVVCLATPALFFAVGQGYRNFTQTSDDEVVAFLDRA
HRDFAEAGAIDAAADPPLRDEEVQVVAGPVPVAGHLTVPEKPRGIVVFAHGSGSSRHSIRNRYVAEVLTG
AGFATLLFDLLTPEEERNRANVFDIELLASRLIDVTGWLATQPDTASLPVGYFGASTGAGAALVAAADPR
VNVRAVVSRGGRPDLAGDSLGSVVAPTLLIVGGRDQVVLELNQRAQAVIPGKCQLTVVPGATHLFEEPGT
LEQVAKLACDWFIDHLCGPGPSG